I am using a KX125 flywheel, which I have had the taper machined to suit the KR crank.
I've stuck a barrel and piston on, to find TDC using a DTI and put a paper protractor on the face of the flywheel back plate, so I can see how many degrees I'm rotating the crank, poitioning it all at 0 degrees TDC on the left cylinder.

I then back the crank up 35 degrees BTDC and mark out the rough positions of where the pickups will be in the back plate. By Conincidence, it looks like the front of the lobe lines up with the mark on the back plate.

Because the flywheel is much smaller, it sits further away from the back plate, so I will need to weld some mounting tabs on, so the pickups can be secured in position.